PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036087001
Common NameGSBRNA2T00036087001, LOC106411443
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 432aa    MW: 47685.4 Da    PI: 6.9067
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036087001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-17134183155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSBRNA2T00036087001 134 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 183
                          78*******************......55************************997 PP

2AP243.29.8e-14226276155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  GSBRNA2T00036087001 226 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 276
                          89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16134192IPR016177DNA-binding domain
PfamPF008474.7E-9134183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-17135191IPR001471AP2/ERF domain
PROSITE profilePS5103217.596135191IPR001471AP2/ERF domain
SMARTSM003809.6E-32135197IPR001471AP2/ERF domain
CDDcd000181.51E-11135192No hitNo description
CDDcd000187.34E-26226286No hitNo description
SuperFamilySSF541712.62E-17226286IPR016177DNA-binding domain
PfamPF008472.6E-9226276IPR001471AP2/ERF domain
PROSITE profilePS5103215.672227284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16227285IPR001471AP2/ERF domain
SMARTSM003806.3E-32227290IPR001471AP2/ERF domain
PRINTSPR003673.3E-6228239IPR001471AP2/ERF domain
PRINTSPR003673.3E-6266286IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MWDLNDSPHQ TVRQEESEEF CYSSPGKRVG SFSNSSSSAV VIEDGSDDDE PNRVRANNPL  60
ITHQFFPEME SSVGDNGGGG PGSSFPRSHW FGVQFSQSDL ATGSSVGKPA TVGAVVEPAQ  120
PLKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK  180
FRGVEADINF NIEDYDNDMK QMTNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE  240
ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKCNGKDAV TNFDSSIYDE ELNAESSGNP  300
IQHDHNLDLS LGNSVNSKHN GQDMRLKMNQ QDSLHSNEIL GLGPGMVNYI PDSVHQFPGS  360
SNIHGGGGFS LFPVTENHQF EGRTTANQVL ANAAASSGFS PHNHHQIFNS TPTSHQNWLQ  420
TNGFQPPLMR P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.154850.0leaf| microspore-derived embryo| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6374680.0HQ637468.1 Brassica napus APETALA2 (APETALA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593199.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
RefseqXP_013593200.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
RefseqXP_013707660.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479270.0AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A078JCE80.0A0A078JCE8_BRANA; BnaCnng39690D protein
TrEMBLA0A0D3DI420.0A0A0D3DI42_BRAOL; Uncharacterized protein
STRINGBra017809.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.20.0AP2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]